5. Supplemental Material

5.1. Benchmark Files

All samples contain TMT labeled E.Coli cells on human background. The different Instruments (Orbitrap, Lumos, HF, HF-X) were run in DDA mode.

Machines:

HF :

P0109699E18

P0109699E19

P0109699E22

HF-X :

P0174319B7

P0174319B8

P0174319B9

Lumos:

P0109699K8

P0109699K9

P0109699K10

OrbiElite:

P81464G09

P81464G10

Raw Files are accesible via PRIDE:
<tba>
All benchmark files (igz) used in the paper can be found here:
https://drive.google.com/drive/folders/1GbN0cAqiyAEljcuooYKkqW4rcKlOlc5n